Contents

• 1. Preface
• 2. Introduction
  • 2.1 The CCA Software Environment
  • 2.2 Where to Go from Here
    • 2.2.1 For Self-Study Users
    • 2.2.2 For Organized Tutorial Participants
  
  
• 3. Assembling and Running a CCA Application
  • 3.1 Using the GUI Front-End to Ccaffeine
    • 3.1.1 Running the GUI Locally (GUI host and Ccaffeine host are Identical)
    • 3.1.2 Running the GUI Remotely (GUI host and Ccaffeine host are Distinct)
    • 3.1.3 Assembling and Running an Application Using the GUI
  • 3.2 Running Ccaffeine Using an rc File
  • 3.3 Notes on More Advanced Usage of the GUI
  
  
• 4. Using Bocca : A Project Manager for SIDL or CCA
  • 4.1 Creating a Bocca Project
  • 4.2 Creating Ports and Components
    • 4.2.1 Creating the Integrator and Function Components
  • 4.3 How to Edit and Find Files in Bocca Projects
  • 4.4 Adding Methods to Ports
  • 4.5 Language-Specific Function, Integrator, and Driver Code
    • 4.5.1 C++ Implementation
    • 4.5.2 Fortran9X Implementation
    • 4.5.3 C Implementation
    • 4.5.4 Python Implementation
    • 4.5.5 Java Implementation
  • 4.6 Automated Testing of Assemblies
    • 4.6.1 Creating a Portable Test
    • 4.6.2 Enabling Memory Testing with Valgrind
  
  
• 5. A Simple PDE Toolkit
  • 5.1 Introduction
  • 5.2 A Problem and its Decomposition
  • 5.3 Components and Assemblies
  • 5.4 Tests
  • 5.5 Exercises
    • 5.5.1 Changing the Initial Conditions
    • 5.5.2 Modifying the Reaction Physics
  • 5.6 Conclusions
  
  
• 6. Using TAU to Monitor the Performance of Components
  • 6.1 Creating the Proxy Component
  • 6.2 Using the Proxy Generator
  • 6.3 Using the Proxy Component
  
  
• 7. Understanding Arrays and Component State
  • 7.1 Introduction
  • 7.2 The CDriver Component
    • 7.2.1 Using SIDL Raw Arrays
    • 7.2.2 Using SIDL Normal Arrays
  • 7.3 Linear Array Operations Components
    • 7.3.1 The CArrayOp Component
    • 7.3.2 The F77ArrayOp Component
    • 7.3.3 The F90ArrayOp Component
  • 7.4 Assignment: NonLinearOp Component and Driver
  
  
• A. What is a Region in the Mesh
• B. Ccaffeine Script File for PDE Example 1
• C. Details of the Mesh and the FieldVar Classes
  • C.1 Codes
  • C.2 An Example
  
  
• D. Remote Access for the CCA Environment
  • D.1 Commandline Access
  • D.2 Graphical Access using X11
    • D.2.1 OpenSSH
    • D.2.2 PuTTY
  • D.3 Tunneling other Connections through SSH
  • D.4 Tunneling with OpenSSH
  • D.5 Tunneling with PuTTY
  
  
• E. Building the CCA Tools and TAU and Setting Up Your Environment
• F. Building the CCA Tools and Setting Up Your Environment
  • F.1 The CCA Tools
    • F.1.1 System Requirements
  • F.2 Downloading and Building the CCA Tools Package
    • F.2.1 Local System Requirements
  • F.3 Downloading and Installing TAU
  • F.4 Setting Up Your Login Environment
  
  
• G. Building the Tutorial Code Tree